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J Vet Sci. 2005 Jun;6(2):117-124 |
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Identification and antigenic site analysis of foot-and-mouth disease virus from pigs and cattle in Korea
Jae Ku Oem1,*, Kwang Nyeong Lee1, In Soo Cho1, Soo Jeong Kye1, Jee Yong Park1, Jong Hyeon Park1, Yong Joo Kim1, Yi Seok Joo1, Hee Jong Song2 |
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1National Veterinary Research and Quarantine Service, Ministry of Agriculture and Forestry, Anyang 430-824, Korea. 2Department of Veterinary Infectious Disease, College of Veterinary Medicine, Chonbuk National University, Jeonju 561-756, Korea. |
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From May to June 2002, a total of 16 foot-and mouth
disease (FMD) outbreaks due to the serotype O virus, Pan
Asia strain, were recorded in Korea. The viruses were
identified by antigen ELISA, RT-PCR and sequence
analysis. The overall nucleotide sequence divergence of
the VP1 region among the 4 isolates in 2002 was 0 to
1.4%, but between O/SKR/2002 and O/SKR/2000 isolates
was 1.9-4.9%. Phylogenetic analysis with the some known
strains from East Asian countries showed that the 4
Korean isolates in 2002 formed one distinct cluster, which
different from clusters of Korean isolates in 2000, with in
the same lineage of the ME-SA topotype strains. Deduced
amino acid sequences around neutralizable antigenic site
on VP1 site of O/SKR/2002 isolates were aligned and
compared with other strains. At the antigenic site 1, the
replacements of the critical amino acid residues at
position 144 from V to L and at position 152 from A to T
were observed in O/SKR/2002 viruses. For antigenic site 2
and 4, there were not significant variations in general. At
the antigenic site 3, the substitutions of amino acid
residues were present at positions 54 and 56 in O/SKR/
2002 isolates and an alternative residue I at position 54
are observed only at the sequence of O/SKR/AS/2002
(cow) virus. And the substitution (L¡æP) of significant
residue at position 144 was detected at the amino acid
sequence of the O/SKR/2002 (cow) virus. |
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