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J Vet Sci. 2007 Dec;8(4):401-407 |
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Sequence analysis of the S1 glycoprotein gene of infectious bronchitis viruses: identification of a novel phylogenetic group in Korea
Ji-Hyun Jang1, Haan-Woo Sung1, Chang-Seon Song2, Hyuk-Moo Kwon1,* |
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1School of Veterinary Medicine and Institute of Veterinary Science, Kangwon National University, Chuncheon 200-701, Korea
2College of Veterinary Medicine, Konkuk University, Seoul 143-701, Korea
* kwonhm@kangwon.ac.kr |
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Twelve Korean infectious bronchitis viruses (IBVs) were
isolated in the field from chickens suspected of being carriers
of infectious bronchitis between 2001 and 2003. The
S1 glycoprotein genes of these IBV isolates were amplified
by reverse transcriptase-polymerase chain reaction (RTPCR)
and analyzed by restriction fragment length polymorphism
(RFLP) analysis. These Korean IBV isolates
were classified into three groups according to their RFLP
patterns obtained using the restriction enzyme HaeIII.
Half of the twelve isolates were similar to the KM91 RFLP
pattern, which is a common pattern in Korea. Three more
isolates were related to the Arkansas strain pattern, but
with some unique variations. The other three viruses
showed variant RFLP patterns. For a comparison with the
published sequences for non-Korean IBV strains, amplified
PCR products from the twelve isolates were cloned
and sequenced. The Korean IBV field isolates had 71.2-
99.7% nucleotide sequence homology with each other and
45.9-80.7% nucleotide sequence homology with non-Korean
IBV strains. With respect to the deduced amino acid sequence,
the Korean IBV isolates had 71.5-99.3% similarity
with each other and 44.9-80.3% similarity with non-
Korean IBV strains. Phylogenetic tree analysis revealed
that some of the IBV isolates appear to belong to a new
group, different from the non-Korean IBV strains or from
previously isolated Korean IBV strains. Specifically, the
new Korean IBV isolates K10217-03, K3-3 and K1255-03
represented a separate group. These findings suggest that
the Korean IBVs appear to be continuously evolving.
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