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J Vet Sci. 2008 Mar;9(1):85-90 |
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Molecular characterization and genogrouping of VP1 of aquatic
birnavirus GC1 isolated from rockfish Sebastes schlegeli in Korea
Seong Joon Joh1,*, Chae Ik Shon1, Sung Won Kang1, Byoung Han Kim1, Byung Yul Jeong1, Kyung Gi Lee1, Jun Hun Kwon1, Gang Jun Heo2 |
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1National Veterinary Research and Quarantine Service, Anyang 430-824, Korea
2College of Veterinary Medicine and Research Institute of Veterinary Medicine, Chungbuk National University, Cheongju 361-763,
Korea
* johsj@nvrqs.go.kr |
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The cDNA nucleotide sequence of genome segment B
encoding the VP1 protein was determined for the aquatic
birnavirus GC1 isolated from the rockfish Sebastes schlegeli
in Korea. The VP1 protein of GC1 contains a 2,538 bp open
reading frame, which encodes a protein comprising 846
amino acid residues that has a predicted MW of 94 kDa. The
sequence contains 6 potential Asn-X-Ser/Thr motifs. Eight
potential Ser phosphorylation sites and 1 potential Tyr
phophorylation site were also identified. GC1 contains the
Leu-Lys-Asn (LKN) motif instead of the typical Gly-Asp-
Asp (GDD) motif found in other aquatic birnaviruses. We
also identified the GLPYIGKT motif, the putative GTPbinding
site at amino acid position 248. In total, the VP1
regions of 22 birnavirus strains were compared for
analyzing the genetic relationship among the family
Birnaviridae. Based on the deduced amino acid sequences,
GC1 was observed to be more closely related to the infectious
pancreatic necrosis virus (IPNV) from the USA, Japan, and
Korea than the IPNV from Europe. Further, aquatic
birnaviruses containing GC1 and IPNV have genogroups
that are distinct from those in the genus Avibirnaviruses and
Entomo-birnaviruses. The birnavirusstrains were clustered
into 5 genogroups based on their amino acid sequences. The
marine aquatic birnaviruses (MABVs) containing GC1
were included in the MABV genogroup; the IPNV strains
isolated from Korea, Japan, and the USA were included in
genogroup 1 and the IPNV strains isolated primarily from
Europe were included in genogroup 2. Avibirnaviruses and
entomobirnaviruses were included in genogroup 3 and 4,
respectively.
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